This chapter describes the practice of supervision used across the spectrum of clinical mental health counseling to train pastoral counselors. It advocates the need for pastoral counseling supervisory training and certification at the state licensure level. The chapter highlights practices that can be used to address spiritual and religious issues within the supervisory process. It addresses the practice of clinical supervision in both academic and agency settings with pastoral counselors in training. Clinical supervision is the mechanism that helps to manage the continuous process of both personal and professional formation. Generally, supervision is categorized as a clinical practice that occurs between individuals in a professional setting. Supervisor training and certification is one way to ensure that pastoral counselors in training and all counselors in training receive supervision that attunes the client’s spirituality/religion into biopsychosocial assessment and treatment. Academic supervisors must also address ethical and legal issues while supervising.